Detailed information of SNP:
|
SNP ID:
sf0806501343(Gbrowse)
Chromosome: chr08 Position: 6501343 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 94.17% | 5.83% |
| All Indica | 774 | 90.83% | 9.17% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 91.01% | 8.99% |
| Indica II | 203 | 91.13% | 8.87% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806501343 | A->T | LOC_Os08g11050(LOC_Os08g11050.1) | Non-Synonymous SNP |