Detailed information of SNP:
|
SNP ID:
sf0806546822(Gbrowse)
Chromosome: chr08 Position: 6546822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 98.27% | 1.73% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 468 | 94.87% | 5.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 99.37% | 0.63% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 62 | 79.03% | 20.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806546822 | C->T | LOC_Os08g11130(LOC_Os08g11130.1) | Non-Synonymous SNP |