Detailed information of SNP:
|
SNP ID:
sf0806547382(Gbrowse)
Chromosome: chr08 Position: 6547382 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 74.28% | 25.72% |
| All Indica | 745 | 93.29% | 6.71% |
| All Japonica | 496 | 42.14% | 57.86% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 361 | 93.91% | 6.09% |
| Indica II | 183 | 88.52% | 11.48% |
| Indica Intermediate | 201 | 96.52% | 3.48% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806547382 | A->G | LOC_Os08g11130(LOC_Os08g11130.1) | Non-Synonymous SNP |