Detailed information of SNP:
|
SNP ID:
sf0806590671(Gbrowse)
Chromosome: chr08 Position: 6590671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 58.00% | 42.00% |
| All Indica | 774 | 89.92% | 10.08% |
| All Japonica | 493 | 2.03% | 97.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 87.19% | 12.81% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 331 | 1.51% | 98.49% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806590671 | A->G | INTERGENIC | None |