Detailed information of SNP:
|
SNP ID:
sf0806592382(Gbrowse)
Chromosome: chr08 Position: 6592382 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 70.74% | 29.26% |
| All Indica | 791 | 95.95% | 4.05% |
| All Japonica | 489 | 24.95% | 75.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 328 | 33.84% | 66.16% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806592382 | T->C | INTERGENIC | None |