Detailed information of SNP:
|
SNP ID:
sf0806612740(Gbrowse)
Chromosome: chr08 Position: 6612740 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 86.36% | 13.64% |
| All Indica | 757 | 81.77% | 18.23% |
| All Japonica | 494 | 93.93% | 6.07% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 354 | 88.70% | 11.30% |
| Indica II | 202 | 70.30% | 29.70% |
| Indica Intermediate | 201 | 81.09% | 18.91% |
| Temperate Japonica | 332 | 93.98% | 6.02% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806612740 | T->C | INTERGENIC | None |