Detailed information of SNP:
|
SNP ID:
sf0806619000(Gbrowse)
Chromosome: chr08 Position: 6619000 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 95.20% | 4.80% |
| All Indica | 783 | 94.00% | 6.00% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 200 | 86.50% | 13.50% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806619000 | G->A | LOC_Os08g11260(LOC_Os08g11260.1) | INTRON |