Detailed information of SNP:
|
SNP ID:
sf0806623981(Gbrowse)
Chromosome: chr08 Position: 6623981 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 95.26% | 4.74% |
| All Indica | 794 | 92.57% | 7.43% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806623981 | T->C | INTERGENIC | None |