Detailed information of SNP:
|
SNP ID:
sf0806702468(Gbrowse)
Chromosome: chr08 Position: 6702468 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 55.42% | 44.58% |
| All Indica | 742 | 90.03% | 9.97% |
| All Japonica | 493 | 1.83% | 98.17% |
| Aus | 39 | 56.41% | 43.59% |
| Indica I | 362 | 95.86% | 4.14% |
| Indica II | 187 | 92.51% | 7.49% |
| Indica Intermediate | 193 | 76.68% | 23.32% |
| Temperate Japonica | 332 | 1.51% | 98.49% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 34 | 61.76% | 38.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806702468 | A->G | LOC_Os08g11430(LOC_Os08g11430.1) | Non-Synonymous SNP |