Detailed information of SNP:
|
SNP ID:
sf0806742018(Gbrowse)
Chromosome: chr08 Position: 6742018 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 73.73% | 26.27% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 490 | 27.55% | 72.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 34.55% | 65.45% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806742018 | A->G | INTERGENIC | None |