Detailed information of SNP:
|
SNP ID:
sf0806817910(Gbrowse)
Chromosome: chr08 Position: 6817910 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 74.20% | 25.80% |
| All Indica | 795 | 90.57% | 9.43% |
| All Japonica | 485 | 42.89% | 57.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 327 | 55.05% | 44.95% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806817910 | T->C | LOC_Os08g11620(LOC_Os08g11620.1) | Non-Synonymous SNP |