Detailed information of SNP:
|
SNP ID:
sf0806864314(Gbrowse)
Chromosome: chr08 Position: 6864314 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 96.91% | 3.09% |
| All Indica | 779 | 96.53% | 3.47% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 197 | 92.39% | 7.61% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806864314 | C->T | INTERGENIC | None |