Detailed information of SNP:
|
SNP ID:
sf0806929072(Gbrowse)
Chromosome: chr08 Position: 6929072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 94.14% | 5.86% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 481 | 92.93% | 7.07% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 94.12% | 5.88% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806929072 | A->G | LOC_Os08g11810(LOC_Os08g11810.1) | Non-Synonymous SNP |