Detailed information of SNP:
|
SNP ID:
sf0806941346(Gbrowse)
Chromosome: chr08 Position: 6941346 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 57.36% | 42.64% |
| All Indica | 782 | 88.87% | 11.13% |
| All Japonica | 493 | 2.43% | 97.57% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 362 | 91.44% | 8.56% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806941346 | C->T | INTERGENIC | None |