Detailed information of SNP:
|
SNP ID:
sf0806944859(Gbrowse)
Chromosome: chr08 Position: 6944859 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 61.83% | 38.17% |
| All Indica | 777 | 95.62% | 4.38% |
| All Japonica | 493 | 3.65% | 96.35% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 362 | 94.20% | 5.80% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 203 | 97.04% | 2.96% |
| Temperate Japonica | 331 | 2.72% | 97.28% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806944859 | T->C | INTERGENIC | None |