Detailed information of SNP:
|
SNP ID:
sf0806947104(Gbrowse)
Chromosome: chr08 Position: 6947104 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 67.17% | 32.83% |
| All Indica | 787 | 90.47% | 9.53% |
| All Japonica | 484 | 23.97% | 76.03% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 325 | 31.38% | 68.62% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806947104 | A->G | INTERGENIC | None |