Detailed information of SNP:
|
SNP ID:
sf0806963419(Gbrowse)
Chromosome: chr08 Position: 6963419 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 76.62% | 23.38% |
| All Indica | 793 | 98.49% | 1.51% |
| All Japonica | 462 | 34.42% | 65.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 310 | 43.55% | 56.45% |
| Tropical Japonica | 91 | 9.89% | 90.11% |
| Japonica Intermediate | 61 | 24.59% | 75.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806963419 | T->C | INTERGENIC | None |