Detailed information of SNP:
|
SNP ID:
sf0807089516(Gbrowse)
Chromosome: chr08 Position: 7089516 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 92.79% | 7.21% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 425 | 77.18% | 22.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 284 | 71.13% | 28.87% |
| Tropical Japonica | 85 | 92.94% | 7.06% |
| Japonica Intermediate | 56 | 83.93% | 16.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807089516 | G->A | INTERGENIC | None |