Detailed information of SNP:
|
SNP ID:
sf0807116552(Gbrowse)
Chromosome: chr08 Position: 7116552 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.35% | 40.65% |
| All Indica | 783 | 88.25% | 11.75% |
| All Japonica | 489 | 5.73% | 94.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 85.52% | 14.48% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 329 | 5.78% | 94.22% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807116552 | A->G | LOC_Os08g12080(LOC_Os08g12080.1) | Synonymous |