Detailed information of SNP:
|
SNP ID:
sf0807127968(Gbrowse)
Chromosome: chr08 Position: 7127968 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 69.73% | 30.27% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 486 | 17.28% | 82.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 326 | 22.70% | 77.30% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807127968 | A->T | LOC_Os08g12110(LOC_Os08g12110.1) | Non-Synonymous SNP |