Detailed information of SNP:
|
SNP ID:
sf0807146313(Gbrowse)
Chromosome: chr08 Position: 7146313 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.03% | 33.97% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 494 | 7.49% | 92.51% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 7.81% | 92.19% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807146313 | A->G | LOC_Os08g12130(LOC_Os08g12130.1) | Non-Synonymous SNP |