Detailed information of SNP:
|
SNP ID:
sf0807151213(Gbrowse)
Chromosome: chr08 Position: 7151213 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 63.33% | 36.67% |
| All Indica | 780 | 96.67% | 3.33% |
| All Japonica | 494 | 5.06% | 94.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 206 | 96.12% | 3.88% |
| Indica Intermediate | 200 | 97.50% | 2.50% |
| Temperate Japonica | 332 | 4.22% | 95.78% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 63.64% | 36.36% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807151213 | A->G | LOC_Os08g12140(LOC_Os08g12140.1) | INTRON |