Detailed information of SNP:
|
SNP ID:
sf0807178146(Gbrowse)
Chromosome: chr08 Position: 7178146 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 63.74% | 36.26% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807178146 | T->C | INTERGENIC | None |