Detailed information of SNP:
|
SNP ID:
sf0807203238(Gbrowse)
Chromosome: chr08 Position: 7203238 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 98.74% | 1.26% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 425 | 96.00% | 4.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 99.67% | 0.33% |
| Tropical Japonica | 70 | 91.43% | 8.57% |
| Japonica Intermediate | 54 | 81.48% | 18.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807203238 | C->T | LOC_Os08g12230(LOC_Os08g12230.1) | UTR_3_PRIME |