Detailed information of SNP:
|
SNP ID:
sf0807261918(Gbrowse)
Chromosome: chr08 Position: 7261918 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 56.20% | 43.80% |
| All Indica | 770 | 85.32% | 14.68% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 354 | 82.20% | 17.80% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 204 | 85.29% | 14.71% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807261918 | T->C | INTERGENIC | None |