Detailed information of SNP:
|
SNP ID:
sf0807271108(Gbrowse)
Chromosome: chr08 Position: 7271108 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 71.28% | 28.72% |
| All Indica | 733 | 60.16% | 39.84% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 346 | 70.81% | 29.19% |
| Indica II | 197 | 39.09% | 60.91% |
| Indica Intermediate | 190 | 62.63% | 37.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807271108 | C->A | INTERGENIC | None |