Detailed information of SNP:
|
SNP ID:
sf0807318117(Gbrowse)
Chromosome: chr08 Position: 7318117 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.14% | 36.86% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807318117 | T->G | INTERGENIC | None |