Detailed information of SNP:
|
SNP ID:
sf0807356137(Gbrowse)
Chromosome: chr08 Position: 7356137 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 62.44% | 37.56% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 484 | 4.34% | 95.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 328 | 2.44% | 97.56% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 62 | 16.13% | 83.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807356137 | T->C | INTERGENIC | None |