Detailed information of SNP:
|
SNP ID:
sf0807386854(Gbrowse)
Chromosome: chr08 Position: 7386854 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 58.74% | 41.26% |
| All Indica | 782 | 87.85% | 12.15% |
| All Japonica | 480 | 3.12% | 96.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 92.86% | 7.14% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 207 | 75.36% | 24.64% |
| Temperate Japonica | 326 | 2.76% | 97.24% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 60 | 6.67% | 93.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807386854 | A->G | LOC_Os08g12490(LOC_Os08g12490.1) | INTRON |