Detailed information of SNP:
|
SNP ID:
sf0807393148(Gbrowse)
Chromosome: chr08 Position: 7393148 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 67.32% | 32.68% |
| All Indica | 759 | 82.21% | 17.79% |
| All Japonica | 495 | 38.79% | 61.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 78.19% | 21.81% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 203 | 81.28% | 18.72% |
| Temperate Japonica | 334 | 50.90% | 49.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807393148 | T->C | INTERGENIC | None |