Detailed information of SNP:
|
SNP ID:
sf0807398844(Gbrowse)
Chromosome: chr08 Position: 7398844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 98.35% | 1.65% |
| All Indica | 766 | 100.00% | 0.00% |
| All Japonica | 441 | 95.01% | 4.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 99.68% | 0.32% |
| Tropical Japonica | 73 | 89.04% | 10.96% |
| Japonica Intermediate | 55 | 76.36% | 23.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807398844 | G->A | LOC_Os08g12500(LOC_Os08g12500.1) | INTRON |