Detailed information of SNP:
|
SNP ID:
sf0807409860(Gbrowse)
Chromosome: chr08 Position: 7409860 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 50.49% | 49.51% |
| All Indica | 715 | 73.57% | 26.43% |
| All Japonica | 495 | 7.68% | 92.32% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 326 | 65.03% | 34.97% |
| Indica II | 202 | 85.64% | 14.36% |
| Indica Intermediate | 187 | 75.40% | 24.60% |
| Temperate Japonica | 334 | 5.99% | 94.01% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807409860 | T->C | LOC_Os08g12520(LOC_Os08g12520.1) | Synonymous |