Detailed information of SNP:
|
SNP ID:
sf0807414293(Gbrowse)
Chromosome: chr08 Position: 7414293 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 75.66% | 24.34% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 491 | 41.75% | 58.25% |
| Aus | 60 | 66.67% | 33.33% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 329 | 54.10% | 45.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807414293 | A->G | LOC_Os08g12530(LOC_Os08g12530.1) | INTRON |