Detailed information of SNP:



SNP ID: sf0807427802(Gbrowse)

Chromosome: chr08

Position: 7427802
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1303 74.29% 25.71%
All Indica691 55.57% 44.43%
All Japonica496 99.19% 0.81%
Aus63 87.30% 12.70%
Indica I310 45.81% 54.19%
Indica II195 73.33% 26.67%
Indica Intermediate186 53.23% 46.77%
Temperate Japonica334 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate39 61.54% 38.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0807427802 G->A LOC_Os08g12550(LOC_Os08g12550.1) Non-Synonymous SNP