Detailed information of SNP:
|
SNP ID:
sf0807427802(Gbrowse)
Chromosome: chr08 Position: 7427802 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1303 | 74.29% | 25.71% |
| All Indica | 691 | 55.57% | 44.43% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 310 | 45.81% | 54.19% |
| Indica II | 195 | 73.33% | 26.67% |
| Indica Intermediate | 186 | 53.23% | 46.77% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807427802 | G->A | LOC_Os08g12550(LOC_Os08g12550.1) | Non-Synonymous SNP |