Detailed information of SNP:
|
SNP ID:
sf0807427853(Gbrowse)
Chromosome: chr08 Position: 7427853 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 92.64% | 7.36% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 491 | 81.26% | 18.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 90.12% | 9.88% |
| Tropical Japonica | 89 | 42.70% | 57.30% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807427853 | G->A | LOC_Os08g12550(LOC_Os08g12550.1) | Non-Synonymous SNP |