Detailed information of SNP:
|
SNP ID:
sf0807446591(Gbrowse)
Chromosome: chr08 Position: 7446591 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1249 | 80.14% | 19.86% |
| All Indica | 651 | 76.50% | 23.50% |
| All Japonica | 492 | 81.10% | 18.90% |
| Aus | 56 | 100.00% | 0.00% |
| Indica I | 292 | 67.47% | 32.53% |
| Indica II | 194 | 88.66% | 11.34% |
| Indica Intermediate | 165 | 78.18% | 21.82% |
| Temperate Japonica | 331 | 76.44% | 23.56% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807446591 | T->C | INTERGENIC | None |