Detailed information of SNP:
|
SNP ID:
sf0807469230(Gbrowse)
Chromosome: chr08 Position: 7469230 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 63.04% | 36.96% |
| All Indica | 776 | 96.91% | 3.09% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 95.82% | 4.18% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807469230 | T->C | INTERGENIC | None |