Detailed information of SNP:
|
SNP ID:
sf0807469233(Gbrowse)
Chromosome: chr08 Position: 7469233 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 62.36% | 37.64% |
| All Indica | 771 | 96.37% | 3.63% |
| All Japonica | 494 | 2.63% | 97.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 95.21% | 4.79% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807469233 | A->G | INTERGENIC | None |