Detailed information of SNP:
|
SNP ID:
sf0807622762(Gbrowse)
Chromosome: chr08 Position: 7622762 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.09% | 36.91% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807622762 | A->G | INTERGENIC | None |