Detailed information of SNP:
|
SNP ID:
sf0807676064(Gbrowse)
Chromosome: chr08 Position: 7676064 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.43% | 30.57% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 492 | 22.15% | 77.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 24.85% | 75.15% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807676064 | A->G | LOC_Os08g12910(LOC_Os08g12910.1) | INTRON |