Detailed information of SNP:
|
SNP ID:
sf0807715783(Gbrowse)
Chromosome: chr08 Position: 7715783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.57% | 49.43% |
| All Indica | 797 | 79.17% | 20.83% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807715783 | C->T | INTERGENIC | None |