Detailed information of SNP:
|
SNP ID:
sf0807732708(Gbrowse)
Chromosome: chr08 Position: 7732708 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.56% | 32.44% |
| All Indica | 796 | 97.61% | 2.39% |
| All Japonica | 497 | 13.88% | 86.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807732708 | G->A | INTERGENIC | None |