Detailed information of SNP:
SNP ID:
sf0807757912(Gbrowse)
Chromosome: chr08 Position: 7757912 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 89.22% | 10.78% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 70.02% | 29.98% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 64.78% | 35.22% |
Tropical Japonica | 94 | 87.23% | 12.77% |
Japonica Intermediate | 68 | 72.06% | 27.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0807757912 | C->T | INTERGENIC | None |