Detailed information of SNP:
|
SNP ID:
sf0807772500(Gbrowse)
Chromosome: chr08 Position: 7772500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.46% | 36.54% |
| All Indica | 795 | 70.19% | 29.81% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 373 | 87.40% | 12.60% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807772500 | G->A | LOC_Os08g13080(LOC_Os08g13080.1) | Non-Synonymous SNP |