Detailed information of SNP:
|
SNP ID:
sf0807800036(Gbrowse)
Chromosome: chr08 Position: 7800036 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.70% | 30.30% |
| All Indica | 799 | 84.36% | 15.64% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 48.36% | 51.64% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807800036 | G->C | LOC_Os08g13130(LOC_Os08g13130.1) | INTRON |