Detailed information of SNP:
|
SNP ID:
sf0807807852(Gbrowse)
Chromosome: chr08 Position: 7807852 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 87.20% | 12.80% |
| All Indica | 792 | 83.21% | 16.79% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 371 | 73.05% | 26.95% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807807852 | A->G | LOC_Os08g13140(LOC_Os08g13140.1) | Synonymous |