Detailed information of SNP:
|
SNP ID:
sf0807808857(Gbrowse)
Chromosome: chr08 Position: 7808857 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 68.39% | 31.61% |
| All Indica | 740 | 78.24% | 21.76% |
| All Japonica | 496 | 49.80% | 50.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 346 | 72.54% | 27.46% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 191 | 80.63% | 19.37% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807808857 | C->T | LOC_Os08g13150(LOC_Os08g13150.1) | Non-Synonymous SNP |