Detailed information of SNP:
|
SNP ID:
sf0807841596(Gbrowse)
Chromosome: chr08 Position: 7841596 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 70.88% | 29.12% |
| All Indica | 759 | 49.93% | 50.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 342 | 73.39% | 26.61% |
| Indica II | 210 | 15.24% | 84.76% |
| Indica Intermediate | 207 | 46.38% | 53.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807841596 | G->T | LOC_Os08g13190(LOC_Os08g13190.1) | Non-Synonymous SNP |