Detailed information of SNP:
|
SNP ID:
sf0807843001(Gbrowse)
Chromosome: chr08 Position: 7843001 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 92.79% | 7.21% |
| All Indica | 755 | 87.81% | 12.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 365 | 96.44% | 3.56% |
| Indica II | 196 | 76.53% | 23.47% |
| Indica Intermediate | 194 | 82.99% | 17.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807843001 | A->C | INTERGENIC | None |