Detailed information of SNP:
|
SNP ID:
sf0807846141(Gbrowse)
Chromosome: chr08 Position: 7846141 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 98.20% | 1.80% |
| All Indica | 773 | 96.90% | 3.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 195 | 95.90% | 4.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807846141 | T->A | INTERGENIC | None |